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ERX4637579: NextSeq 500 paired end sequencing
1 ILLUMINA (NextSeq 500) run: 25.7M spots, 7.7G bases, 2.9Gb downloads

Submitted by: Future Food Beacon @ UoN
Study: Sequencing two back-crossed populations of chemically mutagenised Brassica rapa shown to be high and low overaccumlators of magnesium using short-linked-reads for bulk-segregant analysis
show Abstracthide Abstract
Magnesium (Mg) and calcium (Ca) are essential micronutrients lacking in many human food systems. In grazing livestock, hypomagnesaemia and hypocalcaemia are costly welfare issues. In this study, we idetified an overaccumulator of magnesium and calcium using a forward ionomic screen of chemically mutagenised lines. By backcrossing and 10x Genomics short-read linked-read sequencing of BC2F2 segregants we mapped a single recessive locus and identfied the location and identity of the single base change. This novel breeding target could be used in horticultural and forage Brassica crop improvement programmes, to reduce Mg and Ca deficiencies, in both human and livestock food systems.
Sample: LowMg
SAMEA7494056 • ERS5250704 • All experiments • All runs
Library:
Name: LOWMG_L
Instrument: NextSeq 500
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 25.7M spots, 7.7G bases, 2.9Gb
Run# of Spots# of BasesSizePublished
ERR476592825,684,1347.7G2.9Gb2021-03-31

ID:
13918634

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